The Evolutionarily Conserved TPM1 Super-Enhancer Drives Skeletal Muscle Regeneration via Mechanotransduction Signaling

Super-enhancers (SEs) are critical epigenetic regulators of tissue regeneration, yet their interplay with cellular biomechanics during myogenic differentiation remains unexplored. Here, the TPM1 locus, encoding a core actin-stabilizing protein essential for skeletal muscle regeneration, harbors an evolutionarily conserved SE (TPM1_SE) that may bridge epigenetic control and mechanotransduction. In vitro, TPM1_SE deletion impaired myogenic differentiation and diminished expression of both TPM1 and its circular RNA (circRNA) isoform, CircTPM1. Conditional deletion of TPM1_SE significantly reduce muscle mass and delayed regenerative progression. Mechanistically, TPM1_SE drives expression of linear TPM1 mRNA (mice) and CircTPM1 (bovine) via TEAD4-mediated chromatin looping, coordinating cytoskeletal reorganization during myotube formation. These effects are mediated via activation of the canonical PI3K/AKT signaling pathway through interaction with NKX2.2-a pathway mechanosensitive to cellular tension. Loss of TPM1_SE disrupted NKX2.2-PI3K/AKT signaling. Crucially, CircTPM1 directly bound MYH10, enhancing MYL3-dependent actomyosin assembly, which potentiates cytoskeletal reorganization during myotube formation. Collectively, this findings establish TPM1_SE as an evolutionarily conserved hub integrating epigenetic regulation and biomechanical output. While the murine model underscores its therapeutic potential in muscle regenerative medicine, the bovine CircTPM1-mediated mechanism highlights TPM1_SE as a promising target for genetic improvement of meat quality in livestock.